Detailed information of SNP:
|
SNP ID:
sf0304794784(Gbrowse)
Chromosome: chr03 Position: 4794784 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 60.78% | 39.22% |
| All Indica | 796 | 96.48% | 3.52% |
| All Japonica | 496 | 0.40% | 99.60% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 374 | 98.13% | 1.87% |
| Indica II | 211 | 93.36% | 6.64% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 67 | 1.49% | 98.51% |
| Group VI/Aromatic | 11 | 36.36% | 63.64% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0304794784 | G->A | LOC_Os03g09200(LOC_Os03g09200.1) | INTRON |