Detailed information of SNP:
|
SNP ID:
sf0304796640(Gbrowse)
Chromosome: chr03 Position: 4796640 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 95.62% | 4.38% |
| All Indica | 794 | 92.32% | 7.68% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 97.85% | 2.15% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 209 | 79.43% | 20.57% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0304796640 | C->T | LOC_Os03g09200(LOC_Os03g09200.1) | INTRON |