Detailed information of SNP:
|
SNP ID:
sf0304800697(Gbrowse)
Chromosome: chr03 Position: 4800697 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 58.04% | 41.96% |
| All Indica | 796 | 91.46% | 8.54% |
| All Japonica | 496 | 0.40% | 99.60% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 211 | 93.36% | 6.64% |
| Indica Intermediate | 210 | 80.00% | 20.00% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 67 | 1.49% | 98.51% |
| Group VI/Aromatic | 10 | 30.00% | 70.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0304800697 | A->G | INTERGENIC | None |