Detailed information of SNP:
|
SNP ID:
sf0304834235(Gbrowse)
Chromosome: chr03 Position: 4834235 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 50.92% | 49.08% |
| All Indica | 797 | 84.82% | 15.18% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 37.31% | 62.69% |
| Indica I | 375 | 93.33% | 6.67% |
| Indica II | 213 | 78.87% | 21.13% |
| Indica Intermediate | 209 | 75.60% | 24.40% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 41.46% | 58.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0304834235 | G->A | INTERGENIC | None |