Detailed information of SNP:
|
SNP ID:
sf0304877962(Gbrowse)
Chromosome: chr03 Position: 4877962 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1366 | 98.98% | 1.02% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 445 | 96.85% | 3.15% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 302 | 95.36% | 4.64% |
| Tropical Japonica | 79 | 100.00% | 0.00% |
| Japonica Intermediate | 64 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0304877962 | C->T | LOC_Os03g09810(LOC_Os03g09810.1) | INTRON |