Detailed information of SNP:
|
SNP ID:
sf0304890428(Gbrowse)
Chromosome: chr03 Position: 4890428 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 77.60% | 22.40% |
| All Indica | 795 | 60.75% | 39.25% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 37.80% | 62.20% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 209 | 68.42% | 31.58% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0304890428 | C->A | LOC_Os03g09830(LOC_Os03g09830.2) | INTRON |