Detailed information of SNP:
|
SNP ID:
sf0304898941(Gbrowse)
Chromosome: chr03 Position: 4898941 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 62.54% | 37.46% |
| All Indica | 799 | 98.87% | 1.13% |
| All Japonica | 493 | 1.01% | 98.99% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 65 | 1.54% | 98.46% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0304898941 | T->G | INTERGENIC | None |