Detailed information of SNP:
|
SNP ID:
sf0304915016(Gbrowse)
Chromosome: chr03 Position: 4915016 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 50.39% | 49.61% |
| All Indica | 796 | 14.20% | 85.80% |
| All Japonica | 484 | 99.79% | 0.21% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 5.87% | 94.13% |
| Indica II | 210 | 15.24% | 84.76% |
| Indica Intermediate | 211 | 27.96% | 72.04% |
| Temperate Japonica | 329 | 99.70% | 0.30% |
| Tropical Japonica | 90 | 100.00% | 0.00% |
| Japonica Intermediate | 65 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0304915016 | C->T | INTERGENIC | None |