Detailed information of SNP:
|
SNP ID:
sf0304916113(Gbrowse)
Chromosome: chr03 Position: 4916113 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 63.28% | 36.72% |
| All Indica | 796 | 99.12% | 0.88% |
| All Japonica | 496 | 2.42% | 97.58% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 210 | 97.14% | 2.86% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 67 | 5.97% | 94.03% |
| Group VI/Aromatic | 8 | 25.00% | 75.00% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0304916113 | T->C | INTERGENIC | None |