Detailed information of SNP:
|
SNP ID:
sf0304932333(Gbrowse)
Chromosome: chr03 Position: 4932333 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1391 | 59.31% | 40.69% |
| All Indica | 777 | 95.62% | 4.38% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 367 | 97.82% | 2.18% |
| Indica II | 204 | 95.59% | 4.41% |
| Indica Intermediate | 206 | 91.75% | 8.25% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 38 | 36.84% | 63.16% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0304932333 | A->G | INTERGENIC | None |