Detailed information of SNP:
|
SNP ID:
sf0304933279(Gbrowse)
Chromosome: chr03 Position: 4933279 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 61.47% | 38.53% |
| All Indica | 799 | 97.50% | 2.50% |
| All Japonica | 495 | 0.61% | 99.39% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 333 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0304933279 | T->A | INTERGENIC | None |