Detailed information of SNP:
|
SNP ID:
sf0304937697(Gbrowse)
Chromosome: chr03 Position: 4937697 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 53.35% | 46.65% |
| All Indica | 797 | 92.97% | 7.03% |
| All Japonica | 497 | 0.00% | 100.00% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 212 | 84.43% | 15.57% |
| Indica Intermediate | 211 | 89.10% | 10.90% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 30.95% | 69.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0304937697 | C->T | LOC_Os03g09910(LOC_Os03g09910.1) | INTRON |