Detailed information of SNP:
|
SNP ID:
sf0304937713(Gbrowse)
Chromosome: chr03 Position: 4937713 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1353 | 53.07% | 46.93% |
| All Indica | 799 | 85.36% | 14.64% |
| All Japonica | 432 | 5.32% | 94.68% |
| Aus | 66 | 0.00% | 100.00% |
| Indica I | 375 | 93.33% | 6.67% |
| Indica II | 213 | 84.98% | 15.02% |
| Indica Intermediate | 211 | 71.56% | 28.44% |
| Temperate Japonica | 290 | 7.59% | 92.41% |
| Tropical Japonica | 81 | 1.23% | 98.77% |
| Japonica Intermediate | 61 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 30.95% | 69.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0304937713 | G->A | LOC_Os03g09910(LOC_Os03g09910.1) | INTRON |