Detailed information of SNP:
|
SNP ID:
sf0304943720(Gbrowse)
Chromosome: chr03 Position: 4943720 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 62.46% | 37.54% |
| All Indica | 799 | 98.50% | 1.50% |
| All Japonica | 496 | 1.01% | 98.99% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 334 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0304943720 | G->A | LOC_Os03g09920(LOC_Os03g09920.2) | INTRON |
| sf0304943720 | G->A | LOC_Os03g09920(LOC_Os03g09920.1) | INTRON |