Detailed information of SNP:
|
SNP ID:
sf0304968636(Gbrowse)
Chromosome: chr03 Position: 4968636 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 54.08% | 45.92% |
| All Indica | 792 | 19.70% | 80.30% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 14.78% | 85.22% |
| Indica II | 211 | 17.54% | 82.46% |
| Indica Intermediate | 209 | 30.62% | 69.38% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0304968636 | G->A | INTERGENIC | None |