Detailed information of SNP:
|
SNP ID:
sf0304988524(Gbrowse)
Chromosome: chr03 Position: 4988524 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 62.30% | 37.70% |
| All Indica | 799 | 98.62% | 1.38% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0304988524 | G->A | LOC_Os03g09970(LOC_Os03g09970.2) | Non-Synonymous SNP |
| sf0304988524 | G->A | LOC_Os03g09970(LOC_Os03g09970.1) | Non-Synonymous SNP |
| sf0304988524 | G->A | LOC_Os03g09970(LOC_Os03g09970.4) | Non-Synonymous SNP |
| sf0304988524 | G->A | LOC_Os03g09970(LOC_Os03g09970.3) | Non-Synonymous SNP |