Detailed information of SNP:
|
SNP ID:
sf0304991246(Gbrowse)
Chromosome: chr03 Position: 4991246 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 54.19% | 45.81% |
| All Indica | 799 | 94.49% | 5.51% |
| All Japonica | 497 | 0.00% | 100.00% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 85.45% | 14.55% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 33.33% | 66.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0304991246 | T->A | LOC_Os03g09970(LOC_Os03g09970.2) | UTR_3_PRIME |
| sf0304991246 | T->A | LOC_Os03g09970(LOC_Os03g09970.1) | UTR_3_PRIME |
| sf0304991246 | T->A | LOC_Os03g09970(LOC_Os03g09970.4) | UTR_3_PRIME |
| sf0304991246 | T->A | LOC_Os03g09970(LOC_Os03g09970.3) | UTR_3_PRIME |