Detailed information of SNP:
|
SNP ID:
sf0304996673(Gbrowse)
Chromosome: chr03 Position: 4996673 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1383 | 61.89% | 38.11% |
| All Indica | 764 | 32.20% | 67.80% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 350 | 21.43% | 78.57% |
| Indica II | 207 | 35.27% | 64.73% |
| Indica Intermediate | 207 | 47.34% | 52.66% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0304996673 | G->A | LOC_Os03g09980(LOC_Os03g09980.1) | INTRON |