Detailed information of SNP:
|
SNP ID:
sf0305006503(Gbrowse)
Chromosome: chr03 Position: 5006503 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 61.04% | 38.96% |
| All Indica | 799 | 98.50% | 1.50% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0305006503 | G->A | LOC_Os03g10000(LOC_Os03g10000.1) | Non-Synonymous SNP |