Detailed information of SNP:
|
SNP ID:
sf0305016307(Gbrowse)
Chromosome: chr03 Position: 5016307 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1218 | 69.70% | 30.30% |
| All Indica | 793 | 94.58% | 5.42% |
| All Japonica | 307 | 1.63% | 98.37% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 369 | 93.50% | 6.50% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 278 | 0.00% | 100.00% |
| Tropical Japonica | 11 | 18.18% | 81.82% |
| Japonica Intermediate | 18 | 16.67% | 83.33% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 37 | 75.68% | 24.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0305016307 | G->A | INTERGENIC | None |