Detailed information of SNP:
|
SNP ID:
sf0305025909(Gbrowse)
Chromosome: chr03 Position: 5025909 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 50.78% | 49.22% |
| All Indica | 799 | 87.61% | 12.39% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 93.07% | 6.93% |
| Indica II | 213 | 84.51% | 15.49% |
| Indica Intermediate | 211 | 81.04% | 18.96% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0305025909 | T->A | INTERGENIC | None |