Detailed information of SNP:
|
SNP ID:
sf0305030975(Gbrowse)
Chromosome: chr03 Position: 5030975 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 56.71% | 43.29% |
| All Indica | 799 | 89.36% | 10.64% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 375 | 90.40% | 9.60% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 79.15% | 20.85% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 40 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0305030975 | G->A | INTERGENIC | None |