Detailed information of SNP:
|
SNP ID:
sf0305032999(Gbrowse)
Chromosome: chr03 Position: 5032999 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 50.67% | 49.33% |
| All Indica | 799 | 87.61% | 12.39% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 93.07% | 6.93% |
| Indica II | 213 | 84.98% | 15.02% |
| Indica Intermediate | 211 | 80.57% | 19.43% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0305032999 | C->T | INTERGENIC | None |