Detailed information of SNP:
|
SNP ID:
sf0305057158(Gbrowse)
Chromosome: chr03 Position: 5057158 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 76.27% | 23.73% |
| All Indica | 796 | 68.72% | 31.28% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 374 | 77.54% | 22.46% |
| Indica II | 212 | 61.32% | 38.68% |
| Indica Intermediate | 210 | 60.48% | 39.52% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0305057158 | C->T | INTERGENIC | None |