Detailed information of SNP:
|
SNP ID:
sf0305069863(Gbrowse)
Chromosome: chr03 Position: 5069863 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1406 | 57.40% | 42.60% |
| All Indica | 787 | 90.85% | 9.15% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 66 | 84.85% | 15.15% |
| Indica I | 369 | 89.16% | 10.84% |
| Indica II | 212 | 88.68% | 11.32% |
| Indica Intermediate | 206 | 96.12% | 3.88% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0305069863 | G->A | INTERGENIC | None |