Detailed information of SNP:
|
SNP ID:
sf0305072224(Gbrowse)
Chromosome: chr03 Position: 5072224 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 61.95% | 38.05% |
| All Indica | 790 | 97.09% | 2.91% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 64 | 98.44% | 1.56% |
| Indica I | 370 | 97.57% | 2.43% |
| Indica II | 210 | 95.24% | 4.76% |
| Indica Intermediate | 210 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0305072224 | T->C | INTERGENIC | None |