Detailed information of SNP:
|
SNP ID:
sf0305123834(Gbrowse)
Chromosome: chr03 Position: 5123834 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 51.44% | 48.56% |
| All Indica | 799 | 25.78% | 74.22% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 20.80% | 79.20% |
| Indica II | 213 | 24.88% | 75.12% |
| Indica Intermediate | 211 | 35.55% | 64.45% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0305123834 | C->T | INTERGENIC | None |