Detailed information of SNP:
|
SNP ID:
sf0305126474(Gbrowse)
Chromosome: chr03 Position: 5126474 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1351 | 74.24% | 25.76% |
| All Indica | 798 | 99.37% | 0.63% |
| All Japonica | 434 | 23.50% | 76.50% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 97.64% | 2.36% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 294 | 3.40% | 96.60% |
| Tropical Japonica | 84 | 67.86% | 32.14% |
| Japonica Intermediate | 56 | 62.50% | 37.50% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 38 | 76.32% | 23.68% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0305126474 | A->G | INTERGENIC | None |