Detailed information of SNP:
|
SNP ID:
sf0305128099(Gbrowse)
Chromosome: chr03 Position: 5128099 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1394 | 93.26% | 6.74% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 472 | 80.93% | 19.07% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 330 | 97.58% | 2.42% |
| Tropical Japonica | 83 | 39.76% | 60.24% |
| Japonica Intermediate | 59 | 45.76% | 54.24% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0305128099 | C->T | INTERGENIC | None |