Detailed information of SNP:
SNP ID:
sf0305137686(Gbrowse)
Chromosome: chr03 Position: 5137686 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1418 | 63.33% | 36.67% |
All Indica | 798 | 98.75% | 1.25% |
All Japonica | 497 | 1.01% | 98.99% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 374 | 98.93% | 1.07% |
Indica II | 213 | 97.18% | 2.82% |
Indica Intermediate | 211 | 100.00% | 0.00% |
Temperate Japonica | 335 | 0.30% | 99.70% |
Tropical Japonica | 94 | 2.13% | 97.87% |
Japonica Intermediate | 68 | 2.94% | 97.06% |
Group VI/Aromatic | 14 | 78.57% | 21.43% |
Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0305137686 | A->G | INTERGENIC | None |