Detailed information of SNP:
|
SNP ID:
sf0305146991(Gbrowse)
Chromosome: chr03 Position: 5146991 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 77.56% | 22.44% |
| All Indica | 798 | 71.30% | 28.70% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 66 | 1.52% | 98.48% |
| Indica I | 375 | 78.40% | 21.60% |
| Indica II | 212 | 66.04% | 33.96% |
| Indica Intermediate | 211 | 63.98% | 36.02% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0305146991 | G->A | INTERGENIC | None |