Detailed information of SNP:
|
SNP ID:
sf0305149794(Gbrowse)
Chromosome: chr03 Position: 5149794 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1409 | 69.34% | 30.66% |
| All Indica | 799 | 98.62% | 1.38% |
| All Japonica | 491 | 16.90% | 83.10% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 334 | 1.80% | 98.20% |
| Tropical Japonica | 90 | 51.11% | 48.89% |
| Japonica Intermediate | 67 | 46.27% | 53.73% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 38 | 73.68% | 26.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0305149794 | C->T | INTERGENIC | None |