Detailed information of SNP:
|
SNP ID:
sf0305185351(Gbrowse)
Chromosome: chr03 Position: 5185351 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1408 | 87.71% | 12.29% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 492 | 66.87% | 33.13% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 333 | 85.59% | 14.41% |
| Tropical Japonica | 91 | 17.58% | 82.42% |
| Japonica Intermediate | 68 | 41.18% | 58.82% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 36 | 86.11% | 13.89% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0305185351 | T->C | INTERGENIC | None |