Detailed information of SNP:
|
SNP ID:
sf0305202343(Gbrowse)
Chromosome: chr03 Position: 5202343 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 59.21% | 40.79% |
| All Indica | 797 | 92.47% | 7.53% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 93.57% | 6.43% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 85.78% | 14.22% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0305202343 | T->C | LOC_Os03g10220(LOC_Os03g10220.1) | INTRON |
| sf0305202343 | T->C | LOC_Os03g10224(LOC_Os03g10224.1) | UTR_3_PRIME |