Detailed information of SNP:
|
SNP ID:
sf0305204234(Gbrowse)
Chromosome: chr03 Position: 5204234 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1384 | 87.43% | 12.57% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 465 | 64.09% | 35.91% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 316 | 82.91% | 17.09% |
| Tropical Japonica | 85 | 15.29% | 84.71% |
| Japonica Intermediate | 64 | 35.94% | 64.06% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 39 | 89.74% | 10.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0305204234 | C->T | LOC_Os03g10220(LOC_Os03g10220.1) | INTRON |
| sf0305204234 | C->T | LOC_Os03g10224(LOC_Os03g10224.1) | INTRON |