Detailed information of SNP:
|
SNP ID:
sf0305234129(Gbrowse)
Chromosome: chr03 Position: 5234129 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1325 | 97.89% | 2.11% |
| All Indica | 798 | 100.00% | 0.00% |
| All Japonica | 407 | 93.37% | 6.63% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 271 | 98.52% | 1.48% |
| Tropical Japonica | 80 | 95.00% | 5.00% |
| Japonica Intermediate | 56 | 66.07% | 33.93% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0305234129 | C->T | INTERGENIC | None |