Detailed information of SNP:
|
SNP ID:
sf0305249711(Gbrowse)
Chromosome: chr03 Position: 5249711 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1360 | 96.62% | 3.38% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 442 | 90.05% | 9.95% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 320 | 99.06% | 0.94% |
| Tropical Japonica | 70 | 70.00% | 30.00% |
| Japonica Intermediate | 52 | 61.54% | 38.46% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 94.74% | 5.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0305249711 | G->A | INTERGENIC | None |