Detailed information of SNP:
|
SNP ID:
sf0305292070(Gbrowse)
Chromosome: chr03 Position: 5292070 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1374 | 51.24% | 48.76% |
| All Indica | 774 | 81.40% | 18.60% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 52 | 98.08% | 1.92% |
| Indica I | 359 | 86.63% | 13.37% |
| Indica II | 211 | 78.20% | 21.80% |
| Indica Intermediate | 204 | 75.49% | 24.51% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 12 | 25.00% | 75.00% |
| Intermediate | 39 | 43.59% | 56.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0305292070 | C->A | INTERGENIC | None |