Detailed information of SNP:
|
SNP ID:
sf0305372006(Gbrowse)
Chromosome: chr03 Position: 5372006 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1396 | 64.54% | 35.46% |
| All Indica | 789 | 98.99% | 1.01% |
| All Japonica | 494 | 4.05% | 95.95% |
| Aus | 59 | 98.31% | 1.69% |
| Indica I | 372 | 99.73% | 0.27% |
| Indica II | 207 | 96.62% | 3.38% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 92 | 18.48% | 81.52% |
| Japonica Intermediate | 67 | 2.99% | 97.01% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0305372006 | C->T | LOC_Os03g10540(LOC_Os03g10540.1) | UTR_5_PRIME |