Detailed information of SNP:
|
SNP ID:
sf0305409035(Gbrowse)
Chromosome: chr03 Position: 5409035 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 61.61% | 38.39% |
| All Indica | 796 | 96.36% | 3.64% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 372 | 97.85% | 2.15% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 38 | 63.16% | 36.84% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0305409035 | A->G | INTERGENIC | None |