Detailed information of SNP:
|
SNP ID:
sf0305452341(Gbrowse)
Chromosome: chr03 Position: 5452341 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1332 | 57.81% | 42.19% |
| All Indica | 775 | 95.74% | 4.26% |
| All Japonica | 495 | 0.40% | 99.60% |
| Aus | 17 | 35.29% | 64.71% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 195 | 93.33% | 6.67% |
| Indica Intermediate | 205 | 95.61% | 4.39% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 93 | 1.08% | 98.92% |
| Japonica Intermediate | 67 | 1.49% | 98.51% |
| Group VI/Aromatic | 4 | 0.00% | 100.00% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0305452341 | C->A | INTERGENIC | None |