Detailed information of SNP:
|
SNP ID:
sf0305456276(Gbrowse)
Chromosome: chr03 Position: 5456276 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 83.11% | 16.89% |
| All Indica | 798 | 95.74% | 4.26% |
| All Japonica | 495 | 76.16% | 23.84% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 87.26% | 12.74% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 334 | 94.01% | 5.99% |
| Tropical Japonica | 93 | 11.83% | 88.17% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0305456276 | A->G | INTERGENIC | None |