Detailed information of SNP:
|
SNP ID:
sf0305539812(Gbrowse)
Chromosome: chr03 Position: 5539812 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1358 | 57.07% | 42.93% |
| All Indica | 796 | 94.47% | 5.53% |
| All Japonica | 494 | 0.00% | 100.00% |
| Aus | 22 | 13.64% | 86.36% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 211 | 85.78% | 14.22% |
| Indica Intermediate | 210 | 95.71% | 4.29% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 93 | 0.00% | 100.00% |
| Japonica Intermediate | 66 | 0.00% | 100.00% |
| Group VI/Aromatic | 5 | 0.00% | 100.00% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0305539812 | G->A | INTERGENIC | None |