Detailed information of SNP:
|
SNP ID:
sf0305664264(Gbrowse)
Chromosome: chr03 Position: 5664264 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1307 | 59.91% | 40.09% |
| All Indica | 767 | 98.70% | 1.30% |
| All Japonica | 494 | 0.61% | 99.39% |
| Aus | 4 | 50.00% | 50.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 191 | 95.81% | 4.19% |
| Indica Intermediate | 201 | 99.50% | 0.50% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 93 | 1.08% | 98.92% |
| Japonica Intermediate | 66 | 1.52% | 98.48% |
| Group VI/Aromatic | 5 | 0.00% | 100.00% |
| Intermediate | 37 | 56.76% | 43.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0305664264 | G->A | INTERGENIC | None |