Detailed information of SNP:
|
SNP ID:
sf0305689892(Gbrowse)
Chromosome: chr03 Position: 5689892 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 57.96% | 42.04% |
| All Indica | 796 | 96.73% | 3.27% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 66 | 34.85% | 65.15% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 211 | 96.21% | 3.79% |
| Indica Intermediate | 210 | 96.19% | 3.81% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0305689892 | G->A | INTERGENIC | None |