Detailed information of SNP:
|
SNP ID:
sf0305695086(Gbrowse)
Chromosome: chr03 Position: 5695086 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 55.27% | 44.73% |
| All Indica | 794 | 95.34% | 4.66% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 210 | 87.62% | 12.38% |
| Indica Intermediate | 209 | 95.22% | 4.78% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0305695086 | G->T | LOC_Os03g11069(LOC_Os03g11069.1) | INTRON |