Detailed information of SNP:
|
SNP ID:
sf0305695088(Gbrowse)
Chromosome: chr03 Position: 5695088 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 52.95% | 47.05% |
| All Indica | 788 | 91.62% | 8.38% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 374 | 96.79% | 3.21% |
| Indica II | 205 | 81.46% | 18.54% |
| Indica Intermediate | 209 | 92.34% | 7.66% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0305695088 | T->C | LOC_Os03g11069(LOC_Os03g11069.1) | INTRON |