Detailed information of SNP:
|
SNP ID:
sf0305767566(Gbrowse)
Chromosome: chr03 Position: 5767566 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 93.07% | 6.93% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 495 | 81.62% | 18.38% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 92 | 21.74% | 78.26% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0305767566 | C->T | INTERGENIC | None |