Detailed information of SNP:



SNP ID: sf0305767762(Gbrowse)

Chromosome: chr03

Position: 5767762
Major allele: T

Minor allele: C

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1417 57.52% 42.48%
All Indica799 98.87% 1.13%
All Japonica496 0.40% 99.60%
Aus67 0.00% 100.00%
Indica I375 100.00% 0.00%
Indica II213 96.71% 3.29%
Indica Intermediate211 99.05% 0.95%
Temperate Japonica334 0.60% 99.40%
Tropical Japonica94 0.00% 100.00%
Japonica Intermediate68 0.00% 100.00%
Group VI/Aromatic14 0.00% 100.00%
Intermediate41 56.10% 43.90%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0305767762 C->T INTERGENIC None