Detailed information of SNP:
|
SNP ID:
sf0305822661(Gbrowse)
Chromosome: chr03 Position: 5822661 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 59.82% | 40.18% |
| All Indica | 799 | 98.75% | 1.25% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 29.85% | 70.15% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 39 | 58.97% | 41.03% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0305822661 | G->A | LOC_Os03g11320(LOC_Os03g11320.2) | UTR_5_PRIME |
| sf0305822661 | G->A | LOC_Os03g11320(LOC_Os03g11320.1) | UTR_5_PRIME |